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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 43 12

  2. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 34 21

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 28 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 13 2

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 12 5

Repositories

Showing 10 of 717 repositories
  • device-spinner Public

    construct python objects from yaml files with dependency injection

    AllenNeuralDynamics/device-spinner's past year of commit activity
    Python 0 MIT 0 5 1 Updated Oct 22, 2026
  • aind-fip-dff Public

    This capsule takes an input raw NWB file of fiber data and creates processed DFF traces

    AllenNeuralDynamics/aind-fip-dff's past year of commit activity
    Python 0 MIT 1 5 2 Updated Oct 21, 2026
  • AllenNeuralDynamics/aind-docker-images's past year of commit activity
    Dockerfile 0 MIT 0 11 5 Updated Oct 21, 2026
  • aind-ephys-ibl-gui-conversion Public

    convert ephys data for use in ibl gui

    AllenNeuralDynamics/aind-ephys-ibl-gui-conversion's past year of commit activity
    Python 0 MIT 4 3 2 Updated Oct 22, 2026
  • biodata-models Public

    Registries and controlled vocabularies used in biodata-schema

    AllenNeuralDynamics/biodata-models's past year of commit activity
    Python 0 MIT 0 7 0 Updated Oct 22, 2026
  • Aind.Physiology.Fip Public

    A repository with a Fiber Photometry acquisition pipeline

    AllenNeuralDynamics/Aind.Physiology.Fip's past year of commit activity
    C# 0 MIT 0 5 2 Updated Oct 21, 2026
  • allen-asset-creation-library Public

    Code that can be used to create an automation capsule for Code Ocean pipelines

    AllenNeuralDynamics/allen-asset-creation-library's past year of commit activity
    Python 0 MIT 0 3 1 Updated Oct 21, 2026
  • one-liner Public

    adapter pattern implemented as zmq client/server

    AllenNeuralDynamics/one-liner's past year of commit activity
    Python 3 MIT 0 30 2 Updated Oct 21, 2026
  • AllenNeuralDynamics/aind_exaspim_register_cells's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 21, 2026
  • aind-codeocean-dispatch Public

    Launch, monitor, and capture batches of Code Ocean capsule runs

    AllenNeuralDynamics/aind-codeocean-dispatch's past year of commit activity
    Python 0 MIT 0 0 1 Updated Oct 21, 2026