Algorithmic Bioinformatics Lab @ University of Helsinki

Popular repositories Loading

1. ggcat ggcat Public

   Compacted and colored de Bruijn graph construction and querying

   Rust 100 16

2. themisto themisto Public

   Space-efficient pseudoalignment with a colored de Bruijn graph

   C++ 58 5

3. GraphChainer GraphChainer Public

   An accurate aligner of long reads to a variation graph, based on co-linear chaining

   C++ 35 4

4. SBWT SBWT Public

   Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)

   C++ 24 6

5. matchtigs matchtigs Public

   Minimum plain text representation of kmer sets

   Rust 20 5

6. emerald emerald Public

   EMERALD calculates safety-windows by exploring the suboptimal alignment space

   C++ 19