Issues

• Error in loading model: CUDA_ERROR_UNSUPPORTED_PTX_VERSION

  flatironinstitute/deepblast#171 · Filter by author mohammadian-reza opened on Apr 4, 2025
  4

• Test dataset for CATHS40

  flatironinstitute/deepblast#169 · Filter by author haniulu opened on Jan 15, 2025

• Missing validation metrics

  flatironinstitute/deepblast#166 · Filter by author mortonjt opened on Nov 11, 2024

• SW_cuda modual

  flatironinstitute/deepblast#155 · Filter by author Zhu-Siqi opened on Feb 27, 2024
  8

• Encountering an Issue While Building a Queryable Protein Sequence Database

  flatironinstitute/deepblast#141 · Filter by author pengjk689 opened on Sep 26, 2023
  2

• mat1 and mat2 must have the same dtype

  flatironinstitute/deepblast#140 · Filter by author QUEST2179 opened on Sep 16, 2023
  1

• Pass the device in load_model to Neural aligner

  flatironinstitute/deepblast#137 · Filter by author benjamin-kroeger opened on Jul 27, 2023
  1

• Consistent usage of 'cuda' or 'gpu'

  flatironinstitute/deepblast#136 · Filter by author benjamin-kroeger opened on Jul 27, 2023

• Inference improvements

  enhancementgood first issuehelp wanted
  flatironinstitute/deepblast#130 · Filter by author mortonjt opened on Mar 9, 2023

• Deprecated scripts

  flatironinstitute/deepblast#127 · Filter by author mortonjt opened on Mar 8, 2023

• Index Error?

  flatironinstitute/deepblast#100 · Filter by author sjanssen2 opened on Jun 23, 2022
  1

• subscript error

  flatironinstitute/deepblast#95 · Filter by author sjanssen2 opened on Feb 19, 2021

• wrong DP matrix init?

  flatironinstitute/deepblast#94 · Filter by author sjanssen2 opened on Feb 19, 2021

• wrong return type

  flatironinstitute/deepblast#93 · Filter by author sjanssen2 opened on Feb 19, 2021
  1

• Length bias in scores

  flatironinstitute/deepblast#88 · Filter by author konstin opened on Nov 14, 2020
  1

• Deprecation warning on alignment scores

  flatironinstitute/deepblast#77 · Filter by author mortonjt opened on Sep 19, 2020

• Add another attention layer

  flatironinstitute/deepblast#67 · Filter by author mortonjt opened on Aug 18, 2020

• Add priors for match / gap scores

  flatironinstitute/deepblast#66 · Filter by author mortonjt opened on Aug 18, 2020

• Reduce memory footprint

  flatironinstitute/deepblast#63 · Filter by author mortonjt opened on Aug 15, 2020

• Add filtering parameters to command line

  flatironinstitute/deepblast#43 · Filter by author mortonjt opened on Jul 7, 2020

• Loss functions

  good first issuehelp wanted
  flatironinstitute/deepblast#33 · Filter by author mortonjt opened on Jul 2, 2020

• Length bias

  help wanted
  flatironinstitute/deepblast#32 · Filter by author mortonjt opened on Jul 2, 2020

• Null models

  enhancementhelp wanted
  flatironinstitute/deepblast#30 · Filter by author mortonjt opened on Jul 2, 2020

• Add support for asv

  flatironinstitute/deepblast#17 · Filter by author mortonjt opened on Jun 15, 2020

• Differentiable Viterbi algorithm

  flatironinstitute/deepblast#1 · Filter by author mortonjt opened on Jun 6, 2020